Showcase

Vitessce is being used in the following projects:

• Data portals
  • HuBMAP Data Portal (code) (paper)
  • SenNet Data Portal (code) (paper)
  • KPMP Kidney Tissue Atlas (code) (paper)
  • 4D Nucleome Data Portal (code) (paper)
  • WebAtlas (code) (paper)
  • Azimuth References (code) (paper)
  • Human In Situ Single-cell Transcriptome Atlas (paper)
  • BRain tUmor heterogeneity deCiphEred by high dimensional multiomic analysis (preprint)
• Integration into open-source tools/pipelines
  • OHSU Galaxy (code) (preprint)
  • OMERO + Vitessce (code)
  • Biomage/HMS DBMI Cellenics (code)
  • Nextflow (code)
  • Snakemake (code)
  • VoltRon (code) (preprint)
  • Cbioportal (blog post)
  • Lamin
  • SEAL (code) (preprint)
• Industry/commercial products
  • Parse Biosciences - Trailmaker platform
  • Aspect Analytics
• Publication-associated interactive figures
  • De Jong et al. 2025 bioRxiv (preprint)
  • Qian et al. 2025 Nature (paper)
  • Kerchberger et al. 2024 Nature Communications (code) (paper)
  • Nu Ton et al. 2023 Nature Cell Biology (paper)
  • Petukhov et al. 2021 Nature Biotechnology (code) (paper)
• Other usage within the HIDIVE Lab
  • Polyphony (code)
  • Hybrid mixed rendering (preprint)
  • Spatial-Query plugin